J3_6GSM_012
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 6GSM|1|2|U|1471, 6GSM|1|2|U|1533, 6GSM|1|2|G|1537
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSM_012 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.3605
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GSM|1|2|C|1468
6GSM|1|2|A|1469
6GSM|1|2|C|1470
6GSM|1|2|U|1471
6GSM|1|2|G|1472
*
6GSM|1|2|C|1531
6GSM|1|2|G|1532
6GSM|1|2|U|1533
6GSM|1|2|G|1534
6GSM|1|2|C|1535
6GSM|1|2|U|1536
6GSM|1|2|G|1537
6GSM|1|2|G|1538
*
6GSM|1|2|C|1569
6GSM|1|2|G|1570
6GSM|1|2|A|1571
6GSM|1|2|G|1572
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- KLLA0D10659p
- Chain S
- KLLA0B01562p
- Chain T
- KLLA0A07194p
- Chain Z
- KLLA0B06182p
Coloring options: