J3_6GSN_001

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSN_001 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.1456

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6GSN|1|2|A|41
6GSN|1|2|G|42
*
6GSN|1|2|C|432
6GSN|1|2|G|433
6GSN|1|2|C|434
6GSN|1|2|A|435
6GSN|1|2|A|436
6GSN|1|2|A|437
6GSN|1|2|U|438
*
6GSN|1|2|A|463
6GSN|1|2|G|464
6GSN|1|2|U|465

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain J

KLLA0E23673p

Chain X

RPS23

Chain p

Eukaryotic translation initiation factor 3 subunit B