J3_6GSN_003
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- AUCAG*CUAACUACUG*CAUUU
- Length
- 20 nucleotides
- Bulged bases
- 6GSN|1|2|C|933
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSN_003 not in the Motif Atlas
- Homologous match to J3_8C3A_036
- Geometric discrepancy: 0.1985
- The information below is about J3_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08408.1
- Basepair signature
- cWW-F-F-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6GSN|1|2|A|880
6GSN|1|2|U|881
6GSN|1|2|C|882
6GSN|1|2|A|883
6GSN|1|2|G|884
*
6GSN|1|2|C|926
6GSN|1|2|U|927
6GSN|1|2|A|928
6GSN|1|2|A|929
6GSN|1|2|C|930
6GSN|1|2|U|931
6GSN|1|2|A|932
6GSN|1|2|C|933
6GSN|1|2|U|934
6GSN|1|2|G|935
*
6GSN|1|2|C|942
6GSN|1|2|A|943
6GSN|1|2|U|944
6GSN|1|2|U|945
6GSN|1|2|U|946
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain B
- 40S ribosomal protein S1
- Chain N
- KLLA0F18040p
- Chain O
- 40S ribosomal protein S14
- Chain a
- 40S ribosomal protein S26
Coloring options: