J3_6GSN_012
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 6GSN|1|2|U|1471, 6GSN|1|2|G|1537
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSN_012 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.2842
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GSN|1|2|C|1468
6GSN|1|2|A|1469
6GSN|1|2|C|1470
6GSN|1|2|U|1471
6GSN|1|2|G|1472
*
6GSN|1|2|C|1531
6GSN|1|2|G|1532
6GSN|1|2|U|1533
6GSN|1|2|G|1534
6GSN|1|2|C|1535
6GSN|1|2|U|1536
6GSN|1|2|G|1537
6GSN|1|2|G|1538
*
6GSN|1|2|C|1569
6GSN|1|2|G|1570
6GSN|1|2|A|1571
6GSN|1|2|G|1572
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain F
- KLLA0D10659p
- Chain S
- KLLA0B01562p
- Chain T
- KLLA0A07194p
- Chain Z
- KLLA0B06182p
Coloring options: