J3_6GXM_003

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6GXM|1|A|U|686, 6GXM|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXM_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1302

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6GXM|1|A|U|683
6GXM|1|A|G|684
6GXM|1|A|A|685
6GXM|1|A|U|686
6GXM|1|A|C|687
6GXM|1|A|U|688
6GXM|1|A|A|689
*
6GXM|1|A|U|773
6GXM|1|A|G|774
6GXM|1|A|G|775
*
6GXM|1|A|C|791
6GXM|1|A|A|792
6GXM|1|A|A|793
6GXM|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2