J3_6GXM_010

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6GXM|1|A|A|2518, 6GXM|1|A|U|2519

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXM_010 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1828

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6GXM|1|A|C|2517
6GXM|1|A|A|2518
6GXM|1|A|U|2519
6GXM|1|A|C|2520
*
6GXM|1|A|G|2545
6GXM|1|A|U|2546
6GXM|1|A|A|2547
*
6GXM|1|A|U|2561
6GXM|1|A|U|2562
6GXM|1|A|U|2563
6GXM|1|A|A|2564
6GXM|1|A|A|2565
6GXM|1|A|A|2566
6GXM|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14