J3_6GXM_027

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6GXM|1|A|U|321, 6GXM|1|A|C|323

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXM_027 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1542

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6GXM|1|A|G|297
6GXM|1|A|G|298
6GXM|1|A|A|299
6GXM|1|A|A|300
6GXM|1|A|G|301
*
6GXM|1|A|C|316
6GXM|1|A|G|317
6GXM|1|A|C|318
6GXM|1|A|G|319
6GXM|1|A|A|320
6GXM|1|A|U|321
6GXM|1|A|A|322
6GXM|1|A|C|323
6GXM|1|A|A|324
6GXM|1|A|G|325
*
6GXM|1|A|C|337
6GXM|1|A|G|338
6GXM|1|A|U|339
6GXM|1|A|A|340
6GXM|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24