J3_6GXN_027

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6GXN|1|A|U|321, 6GXN|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXN_027 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1545

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6GXN|1|A|G|297
6GXN|1|A|G|298
6GXN|1|A|A|299
6GXN|1|A|A|300
6GXN|1|A|G|301
*
6GXN|1|A|C|316
6GXN|1|A|G|317
6GXN|1|A|C|318
6GXN|1|A|G|319
6GXN|1|A|A|320
6GXN|1|A|U|321
6GXN|1|A|A|322
6GXN|1|A|C|323
6GXN|1|A|A|324
6GXN|1|A|G|325
*
6GXN|1|A|C|337
6GXN|1|A|G|338
6GXN|1|A|U|339
6GXN|1|A|A|340
6GXN|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24