J3_6GXO_006

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6GXO|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXO_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1443

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6GXO|1|A|C|1306
6GXO|1|A|A|1307
6GXO|1|A|A|1308
6GXO|1|A|G|1309
*
6GXO|1|A|C|1605
6GXO|1|A|C|1606
6GXO|1|A|C|1607
6GXO|1|A|A|1608
6GXO|1|A|A|1609
6GXO|1|A|A|1610
6GXO|1|A|C|1611
*
6GXO|1|A|G|1620
6GXO|1|A|U|1621
6GXO|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34