J3_6GXO_027

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6GXO|1|A|U|34, 6GXO|1|A|U|448, 6GXO|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXO_027 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1558

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6GXO|1|A|C|32
6GXO|1|A|C|33
6GXO|1|A|U|34
6GXO|1|A|G|35
*
6GXO|1|A|C|445
6GXO|1|A|G|446
6GXO|1|A|A|447
6GXO|1|A|U|448
6GXO|1|A|A|449
6GXO|1|A|G|450
6GXO|1|A|U|451
6GXO|1|A|G|452
6GXO|1|A|A|453
6GXO|1|A|A|454
6GXO|1|A|C|455
6GXO|1|A|C|456
6GXO|1|A|A|457
6GXO|1|A|G|458
6GXO|1|A|U|459
6GXO|1|A|A|460
6GXO|1|A|C|461
*
6GXO|1|A|G|468
6GXO|1|A|G|469
6GXO|1|A|A|470
6GXO|1|A|A|471
6GXO|1|A|A|472
6GXO|1|A|G|473

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20

Chain T

50S ribosomal protein L23