3D structure

PDB id
6GXP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6GXP_022 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.1228
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6GXP|1|a|C|1063
6GXP|1|a|G|1064
6GXP|1|a|U|1065
6GXP|1|a|C|1066
6GXP|1|a|A|1067
6GXP|1|a|G|1068
*
6GXP|1|a|C|1107
6GXP|1|a|G|1108
6GXP|1|a|C|1109
6GXP|1|a|A|1110
6GXP|1|a|A|1111
6GXP|1|a|C|1112
6GXP|1|a|C|1113
*
6GXP|1|a|G|1187
6GXP|1|a|A|1188
6GXP|1|a|U|1189
6GXP|1|a|G|1190
6GXP|1|a|A|1191
6GXP|1|a|C|1192
6GXP|1|a|G|1193

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain e
30S ribosomal protein S5
Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14

Coloring options:


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