J3_6GZ3_012

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ3_012 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.1588

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6GZ3|1|A2|C|3908
6GZ3|1|A2|G|3909
6GZ3|1|A2|G|3910
*
6GZ3|1|A2|C|4044
6GZ3|1|A2|U|4045
6GZ3|1|A2|G|4046
6GZ3|1|A2|A|4047
6GZ3|1|A2|C|4048
*
6GZ3|1|A2|G|4130
6GZ3|1|A2|G|4131
6GZ3|1|A2|A|4132
6GZ3|1|A2|C|4133
6GZ3|1|A2|A|4134
6GZ3|1|A2|G|4135

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

Ribosomal protein L8

Chain AG

ribosomal protein eL8

Chain AN

Ribosomal protein L15