J3_6GZ3_025
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZ3_025 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.186
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6GZ3|1|B1|U|1225
6GZ3|1|B1|G|1226
6GZ3|1|B1|G|1227
6GZ3|1|B1|A|1228
*
6GZ3|1|B1|U|1530
6GZ3|1|B1|A|1531
6GZ3|1|B1|C|1532
*
6GZ3|1|B1|G|1638
6GZ3|1|B1|G|1639
6GZ3|1|B1|A|1640
6GZ3|1|B1|A|1641
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BF
- Ribosomal protein S5
- Chain BQ
- ribosomal protein uS9
- Chain BS
- ribosomal protein uS13
- Chain BT
- ribosomal protein eS19
- Chain BZ
- ribosomal protein eS25
- Chain Bw
- Transfer RNA; tRNA
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