J3_6GZ3_032
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 6GZ3|1|A2|U|348, 6GZ3|1|A2|A|356, 6GZ3|1|A3|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZ3_032 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0811
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6GZ3|1|A2|C|345
6GZ3|1|A2|G|346
6GZ3|1|A2|A|347
6GZ3|1|A2|U|348
6GZ3|1|A2|A|349
6GZ3|1|A2|G|350
6GZ3|1|A2|U|351
6GZ3|1|A2|C|352
6GZ3|1|A2|A|353
6GZ3|1|A2|A|354
6GZ3|1|A2|C|355
6GZ3|1|A2|A|356
6GZ3|1|A2|A|357
6GZ3|1|A2|G|358
6GZ3|1|A2|U|359
6GZ3|1|A2|A|360
6GZ3|1|A2|C|361
*
6GZ3|1|A2|G|368
6GZ3|1|A2|G|369
6GZ3|1|A2|A|370
6GZ3|1|A2|A|371
6GZ3|1|A2|A|372
6GZ3|1|A2|G|373
*
6GZ3|1|A3|C|21
6GZ3|1|A3|U|22
6GZ3|1|A3|C|23
6GZ3|1|A3|G|24
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain AC
- ribosomal protein uL4
- Chain AY
- Ribosomal protein L26
- Chain Aj
- Ribosomal protein L37
- Chain Al
- ribosomal protein eL39
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