J3_6GZ3_036
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 6GZ3|1|A2|C|2449, 6GZ3|1|A2|A|2451, 6GZ3|1|A2|G|2454, 6GZ3|1|A2|G|2482, 6GZ3|1|A2|C|2484
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZ3_036 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.5927
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6GZ3|1|A2|A|2430
6GZ3|1|A2|G|2431
6GZ3|1|A2|A|2432
6GZ3|1|A2|U|2433
6GZ3|1|A2|G|2434
6GZ3|1|A2|G|2435
*
6GZ3|1|A2|C|2444
6GZ3|1|A2|G|2445
6GZ3|1|A2|U|2446
6GZ3|1|A2|U|2447
6GZ3|1|A2|C|2448
6GZ3|1|A2|C|2449
6GZ3|1|A2|G|2450
6GZ3|1|A2|A|2451
6GZ3|1|A2|A|2452
6GZ3|1|A2|G|2453
6GZ3|1|A2|G|2454
6GZ3|1|A2|G|2455
*
6GZ3|1|A2|C|2480
6GZ3|1|A2|G|2481
6GZ3|1|A2|G|2482
6GZ3|1|A2|C|2483
6GZ3|1|A2|C|2484
6GZ3|1|A2|G|2485
6GZ3|1|A2|A|2486
6GZ3|1|A2|U|2487
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AA
- Ribosomal protein L8
- Chain AG
- ribosomal protein eL8
- Chain AN
- Ribosomal protein L15
- Chain AX
- ribosomal protein uL23
- Chain Aj
- Ribosomal protein L37
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