J3_6GZ3_037

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ3_037 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1819

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

6GZ3|1|A2|A|2577
6GZ3|1|A2|G|2578
6GZ3|1|A2|A|2579
6GZ3|1|A2|A|2580
6GZ3|1|A2|G|2581
*
6GZ3|1|A2|C|2716
6GZ3|1|A2|C|2717
*
6GZ3|1|A2|G|2721
6GZ3|1|A2|A|2722
6GZ3|1|A2|A|2723
6GZ3|1|A2|A|2724
6GZ3|1|A2|A|2725
6GZ3|1|A2|U|2726

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

Ribosomal protein L8

Chain Ag

ribosomal protein eL34

Chain Ap

ribosomal protein eL43