J3_6GZ4_001

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGCGCC*GCGUACGG*CCGG

Length

19 nucleotides

Bulged bases

6GZ4|1|A2|G|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|A2|C|112
6GZ4|1|A2|A|113
6GZ4|1|A2|G|114
6GZ4|1|A2|C|115
6GZ4|1|A2|G|116
6GZ4|1|A2|C|117
6GZ4|1|A2|C|118
*
6GZ4|1|A2|G|151
6GZ4|1|A2|C|152
6GZ4|1|A2|G|153
6GZ4|1|A2|U|154
6GZ4|1|A2|A|155
6GZ4|1|A2|C|156
6GZ4|1|A2|G|157
6GZ4|1|A2|G|158
*
6GZ4|1|A2|C|269
6GZ4|1|A2|C|270
6GZ4|1|A2|G|271
6GZ4|1|A2|G|272

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AG

ribosomal protein eL8

Chain AL

ribosomal protein eL13

Chain AN

ribosomal protein eL15

Chain Ah

ribosomal protein uL29

Chain Ai

ribosomal protein eL36