J3_6GZ4_019

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AG*CGCAAAUUA*UAGU

Length

15 nucleotides

Bulged bases

6GZ4|1|B1|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|B1|A|40
6GZ4|1|B1|G|41
*
6GZ4|1|B1|C|481
6GZ4|1|B1|G|482
6GZ4|1|B1|C|483
6GZ4|1|B1|A|484
6GZ4|1|B1|A|485
6GZ4|1|B1|A|486
6GZ4|1|B1|U|487
6GZ4|1|B1|U|488
6GZ4|1|B1|A|489
*
6GZ4|1|B1|U|511
6GZ4|1|B1|A|512
6GZ4|1|B1|G|513
6GZ4|1|B1|U|514

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BJ

ribosomal protein uS4

Chain BX

ribosomal protein uS12

Chain BY

ribosomal protein eS24