J3_6GZ4_022

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

6GZ4|1|B1|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ4_022 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.111

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6GZ4|1|B1|A|938
6GZ4|1|B1|U|939
6GZ4|1|B1|U|940
6GZ4|1|B1|C|941
*
6GZ4|1|B1|G|985
6GZ4|1|B1|G|986
6GZ4|1|B1|A|987
6GZ4|1|B1|C|988
6GZ4|1|B1|C|989
6GZ4|1|B1|A|990
6GZ4|1|B1|G|991
6GZ4|1|B1|A|992
6GZ4|1|B1|G|993
*
6GZ4|1|B1|C|1000
6GZ4|1|B1|A|1001
6GZ4|1|B1|U|1002
6GZ4|1|B1|U|1003
6GZ4|1|B1|U|1004

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain Ap

ribosomal protein eL43

Chain BB

ribosomal protein eS1

Chain BN

ribosomal protein uS15

Chain BO

ribosomal protein uS11

Chain Ba

ribosomal protein eS26