J3_6GZ4_034

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGCAGUCCGCC*GCGGUGCG*CGACGUC

Length

27 nucleotides

Bulged bases

6GZ4|1|A2|A|446, 6GZ4|1|A2|G|447, 6GZ4|1|A2|U|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|A2|G|442
6GZ4|1|A2|C|443
6GZ4|1|A2|G|444
6GZ4|1|A2|C|445
6GZ4|1|A2|A|446
6GZ4|1|A2|G|447
6GZ4|1|A2|U|448
6GZ4|1|A2|C|449
6GZ4|1|A2|C|450
6GZ4|1|A2|G|451
6GZ4|1|A2|C|452
6GZ4|1|A2|C|453
*
6GZ4|1|A2|G|689
6GZ4|1|A2|C|690
6GZ4|1|A2|G|691
6GZ4|1|A2|G|692
6GZ4|1|A2|U|693
6GZ4|1|A2|G|694
6GZ4|1|A2|C|695
6GZ4|1|A2|G|696
*
6GZ4|1|A2|C|1275
6GZ4|1|A2|G|1276
6GZ4|1|A2|A|1277
6GZ4|1|A2|C|1278
6GZ4|1|A2|G|1279
6GZ4|1|A2|U|1280
6GZ4|1|A2|C|1281

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

ribosomal protein eL6

Chain Ae

ribosomal protein eL32

Chain Af

ribosomal protein eL33

Chain At

ribosomal protein eL28