J3_6GZ4_035

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACC*GAGGGAGCGAGACCCGUCGCCGC*GCACGGGGU

Length

35 nucleotides

Bulged bases

6GZ4|1|A2|G|950, 6GZ4|1|A2|A|953, 6GZ4|1|A2|C|954, 6GZ4|1|A2|C|955, 6GZ4|1|A2|G|957, 6GZ4|1|A2|G|1264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|A2|A|702
6GZ4|1|A2|C|703
6GZ4|1|A2|C|704
*
6GZ4|1|A2|G|942
6GZ4|1|A2|A|943
6GZ4|1|A2|G|944
6GZ4|1|A2|G|945
6GZ4|1|A2|G|946
6GZ4|1|A2|A|947
6GZ4|1|A2|G|948
6GZ4|1|A2|C|949
6GZ4|1|A2|G|950
6GZ4|1|A2|A|951
6GZ4|1|A2|G|952
6GZ4|1|A2|A|953
6GZ4|1|A2|C|954
6GZ4|1|A2|C|955
6GZ4|1|A2|C|956
6GZ4|1|A2|G|957
6GZ4|1|A2|U|958
6GZ4|1|A2|C|959
6GZ4|1|A2|G|960
6GZ4|1|A2|C|961
6GZ4|1|A2|C|962
6GZ4|1|A2|G|963
6GZ4|1|A2|C|964
*
6GZ4|1|A2|G|1260
6GZ4|1|A2|C|1261
6GZ4|1|A2|A|1262
6GZ4|1|A2|C|1263
6GZ4|1|A2|G|1264
6GZ4|1|A2|G|1265
6GZ4|1|A2|G|1266
6GZ4|1|A2|G|1267
6GZ4|1|A2|U|1268

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AE

ribosomal protein eL6

Chain AF

ribosomal protein uL30

Chain Ae

ribosomal protein eL32

Chain Af

ribosomal protein eL33

Chain At

ribosomal protein eL28