J3_6GZ4_038

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGAU

Length

26 nucleotides

Bulged bases

6GZ4|1|A2|C|2449, 6GZ4|1|A2|A|2451, 6GZ4|1|A2|G|2454, 6GZ4|1|A2|C|2484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ4_038 not in the Motif Atlas

Homologous match to J3_8CRE_016

Geometric discrepancy: 0.5945

The information below is about J3_8CRE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65403.1

Basepair signature

cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6GZ4|1|A2|A|2430
6GZ4|1|A2|G|2431
6GZ4|1|A2|A|2432
6GZ4|1|A2|U|2433
6GZ4|1|A2|G|2434
6GZ4|1|A2|G|2435
*
6GZ4|1|A2|C|2444
6GZ4|1|A2|G|2445
6GZ4|1|A2|U|2446
6GZ4|1|A2|U|2447
6GZ4|1|A2|C|2448
6GZ4|1|A2|C|2449
6GZ4|1|A2|G|2450
6GZ4|1|A2|A|2451
6GZ4|1|A2|A|2452
6GZ4|1|A2|G|2453
6GZ4|1|A2|G|2454
6GZ4|1|A2|G|2455
*
6GZ4|1|A2|C|2480
6GZ4|1|A2|G|2481
6GZ4|1|A2|G|2482
6GZ4|1|A2|C|2483
6GZ4|1|A2|C|2484
6GZ4|1|A2|G|2485
6GZ4|1|A2|A|2486
6GZ4|1|A2|U|2487

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AA

ribosomal protein uL2

Chain AG

ribosomal protein eL8

Chain AN

ribosomal protein eL15

Chain AX

ribosomal protein uL23

Chain Aj

ribosomal protein eL37