J3_6GZ4_044

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

6GZ4|1|B1|U|227, 6GZ4|1|B1|C|237, 6GZ4|1|B1|C|284, 6GZ4|1|B1|U|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|B1|C|223
6GZ4|1|B1|A|224
6GZ4|1|B1|G|225
6GZ4|1|B1|A|226
6GZ4|1|B1|U|227
6GZ4|1|B1|C|228
6GZ4|1|B1|A|229
6GZ4|1|B1|A|230
6GZ4|1|B1|A|231
6GZ4|1|B1|A|232
6GZ4|1|B1|C|233
6GZ4|1|B1|C|234
6GZ4|1|B1|A|235
6GZ4|1|B1|A|236
6GZ4|1|B1|C|237
6GZ4|1|B1|C|238
*
6GZ4|1|B1|G|283
6GZ4|1|B1|C|284
6GZ4|1|B1|U|285
6GZ4|1|B1|U|286
6GZ4|1|B1|U|287
6GZ4|1|B1|G|288
*
6GZ4|1|B1|C|295
6GZ4|1|B1|U|296
6GZ4|1|B1|A|297
6GZ4|1|B1|G|298

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BG

ribosomal protein eS6

Chain BI

ribosomal protein eS8

Chain BL

ribosomal protein uS17