J3_6GZ5_006

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

6GZ5|1|A2|A|1979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ5_006 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.3004

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6GZ5|1|A2|G|1950
6GZ5|1|A2|A|1951
6GZ5|1|A2|C|1952
*
6GZ5|1|A2|G|1976
6GZ5|1|A2|C|1977
6GZ5|1|A2|U|1978
6GZ5|1|A2|A|1979
6GZ5|1|A2|A|1980
6GZ5|1|A2|G|1981
6GZ5|1|A2|G|1982
*
6GZ5|1|A2|C|1997
6GZ5|1|A2|A|1998
6GZ5|1|A2|C|1999

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AK

ribosomal protein uL10

Chain Am

ribosomal protein eL40

Chain Aq

ribosomal protein uL11