J3_6GZ5_012

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ5_012 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1496

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6GZ5|1|A2|C|3908
6GZ5|1|A2|G|3909
6GZ5|1|A2|G|3910
*
6GZ5|1|A2|C|4044
6GZ5|1|A2|U|4045
6GZ5|1|A2|G|4046
6GZ5|1|A2|A|4047
6GZ5|1|A2|C|4048
*
6GZ5|1|A2|G|4130
6GZ5|1|A2|G|4131
6GZ5|1|A2|A|4132
6GZ5|1|A2|C|4133
6GZ5|1|A2|A|4134
6GZ5|1|A2|G|4135

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

ribosomal protein uL2

Chain AG

ribosomal protein eL8

Chain AN

ribosomal protein eL15