J3_6GZ5_028

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ5_028 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1822

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6GZ5|1|B1|U|1350
6GZ5|1|B1|G|1351
*
6GZ5|1|B1|U|1360
6GZ5|1|B1|G|1361
6GZ5|1|B1|U|1362
6GZ5|1|B1|C|1363
*
6GZ5|1|B1|G|1375
6GZ5|1|B1|A|1376
6GZ5|1|B1|U|1377
6GZ5|1|B1|A|1378
6GZ5|1|B1|A|1379

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BA

ribosomal protein uS2

Chain BC

ribosomal protein uS5

Chain BR

ribosomal protein eS17