J3_6GZ5_031

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUAGUCAACAAGUAC*GGAAAG*CUCG

Length

27 nucleotides

Bulged bases

6GZ5|1|A2|U|348, 6GZ5|1|A2|A|356, 6GZ5|1|A3|C|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ5_031 not in the Motif Atlas

Homologous match to J3_8C3A_047

Geometric discrepancy: 0.0847

The information below is about J3_8C3A_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24554.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

7

Unit IDs

6GZ5|1|A2|C|345
6GZ5|1|A2|G|346
6GZ5|1|A2|A|347
6GZ5|1|A2|U|348
6GZ5|1|A2|A|349
6GZ5|1|A2|G|350
6GZ5|1|A2|U|351
6GZ5|1|A2|C|352
6GZ5|1|A2|A|353
6GZ5|1|A2|A|354
6GZ5|1|A2|C|355
6GZ5|1|A2|A|356
6GZ5|1|A2|A|357
6GZ5|1|A2|G|358
6GZ5|1|A2|U|359
6GZ5|1|A2|A|360
6GZ5|1|A2|C|361
*
6GZ5|1|A2|G|368
6GZ5|1|A2|G|369
6GZ5|1|A2|A|370
6GZ5|1|A2|A|371
6GZ5|1|A2|A|372
6GZ5|1|A2|G|373
*
6GZ5|1|A3|C|21
6GZ5|1|A3|U|22
6GZ5|1|A3|C|23
6GZ5|1|A3|G|24

Current chains

Chain A2

28S ribosomal RNA

Chain A3

5.8S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AY

ribosomal protein uL24

Chain Aj

ribosomal protein eL37

Chain Al

ribosomal protein eL39