J3_6GZ5_032

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

6GZ5|1|A2|G|403, 6GZ5|1|A2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ5_032 not in the Motif Atlas

Homologous match to J3_8C3A_049

Geometric discrepancy: 0.355

The information below is about J3_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6GZ5|1|A2|U|374
6GZ5|1|A2|U|375
6GZ5|1|A2|G|376
6GZ5|1|A2|A|377
6GZ5|1|A2|A|378
6GZ5|1|A2|A|379
6GZ5|1|A2|A|380
6GZ5|1|A2|G|381
6GZ5|1|A2|A|382
6GZ5|1|A2|A|383
6GZ5|1|A2|C|384
*
6GZ5|1|A2|G|395
6GZ5|1|A2|A|396
6GZ5|1|A2|G|397
6GZ5|1|A2|U|398
6GZ5|1|A2|U|399
6GZ5|1|A2|C|400
6GZ5|1|A2|A|401
6GZ5|1|A2|A|402
6GZ5|1|A2|G|403
6GZ5|1|A2|A|404
6GZ5|1|A2|G|405
6GZ5|1|A2|G|406
6GZ5|1|A2|G|407
6GZ5|1|A2|C|408
6GZ5|1|A2|G|409
*
6GZ5|1|A3|C|19
6GZ5|1|A3|A|20

Current chains

Chain A2

28S ribosomal RNA

Chain A3

5.8S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AP

ribosomal protein uL22

Chain AY

ribosomal protein uL24

Chain Al

ribosomal protein eL39