J3_6GZ5_040
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 6GZ5|1|A2|U|4336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZ5_040 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1344
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6GZ5|1|A2|G|4190
6GZ5|1|A2|U|4191
6GZ5|1|A2|C|4192
*
6GZ5|1|A2|G|4293
6GZ5|1|A2|C|4294
6GZ5|1|A2|C|4295
6GZ5|1|A2|U|4296
6GZ5|1|A2|C|4297
6GZ5|1|A2|A|4298
6GZ5|1|A2|C|4299
6GZ5|1|A2|G|4300
6GZ5|1|A2|A|4301
6GZ5|1|A2|U|4302
6GZ5|1|A2|C|4303
6GZ5|1|A2|C|4304
*
6GZ5|1|A2|G|4332
6GZ5|1|A2|G|4333
6GZ5|1|A2|U|4334
6GZ5|1|A2|G|4335
6GZ5|1|A2|U|4336
6GZ5|1|A2|C|4337
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AQ
- ribosomal protein eL18
- Chain AT
- ribosomal protein eL21
- Chain Aa
- ribosomal protein uL15
- Chain Ao
- ribosomal protein eL42
- Chain Bw
- Transfer RNA; tRNA
Coloring options: