J3_6GZQ_001

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZQ_001 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.1634

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6GZQ|1|A1|G|30
6GZQ|1|A1|C|31
*
6GZQ|1|A1|G|502
6GZQ|1|A1|U|503
6GZQ|1|A1|G|504
6GZQ|1|A1|A|505
6GZQ|1|A1|A|506
6GZQ|1|A1|A|507
6GZQ|1|A1|A|508
6GZQ|1|A1|G|509
*
6GZQ|1|A1|C|536
6GZQ|1|A1|C|537

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain P1

50S ribosomal protein L20

Chain T1

50S ribosomal protein L24