J3_6GZQ_006

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

6GZQ|1|A1|A|1350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZQ_006 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1476

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6GZQ|1|A1|C|1346
6GZQ|1|A1|G|1347
6GZQ|1|A1|U|1348
6GZQ|1|A1|A|1349
6GZQ|1|A1|A|1350
6GZQ|1|A1|G|1351
*
6GZQ|1|A1|C|1673
6GZQ|1|A1|G|1674
6GZQ|1|A1|G|1675
*
6GZQ|1|A1|U|1688
6GZQ|1|A1|C|1689
6GZQ|1|A1|A|1690
6GZQ|1|A1|G|1691

Current chains

Chain A1

23S ribosomal RNA

Nearby chains