J3_6GZQ_008

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZQ_008 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.158

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6GZQ|1|A1|U|2115
6GZQ|1|A1|U|2116
6GZQ|1|A1|G|2117
*
6GZQ|1|A1|C|2220
6GZQ|1|A1|U|2221
6GZQ|1|A1|A|2222
6GZQ|1|A1|A|2223
6GZQ|1|A1|C|2224
*
6GZQ|1|A1|G|2237
6GZQ|1|A1|G|2238
6GZQ|1|A1|A|2239
6GZQ|1|A1|C|2240
6GZQ|1|A1|A|2241
6GZQ|1|A1|G|2242

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2

Chain H1

50S ribosomal protein L9

Chain W1

50S ribosomal protein L28