J3_6GZQ_011

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZQ_011 not in the Motif Atlas

Homologous match to J3_4WF9_020

Geometric discrepancy: 0.2316

The information below is about J3_4WF9_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6GZQ|1|A1|C|2804
6GZQ|1|A1|A|2805
6GZQ|1|A1|C|2806
*
6GZQ|1|A1|G|2818
6GZQ|1|A1|G|2819
6GZQ|1|A1|U|2820
6GZQ|1|A1|A|2821
6GZQ|1|A1|A|2822
6GZQ|1|A1|G|2823
*
6GZQ|1|A1|C|2901
6GZQ|1|A1|G|2902
6GZQ|1|A1|A|2903
6GZQ|1|A1|G|2904
6GZQ|1|A1|G|2905

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3