J3_6GZQ_014

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZQ_014 not in the Motif Atlas

Homologous match to J3_4LFB_011

Geometric discrepancy: 0.1689

The information below is about J3_4LFB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01633.1

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6GZQ|1|A2|C|569
6GZQ|1|A2|G|570
6GZQ|1|A2|G|571
*
6GZQ|1|A2|C|634
6GZQ|1|A2|U|635
6GZQ|1|A2|A|636
6GZQ|1|A2|G|637
*
6GZQ|1|A2|C|737
6GZQ|1|A2|G|738

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain H2

30S ribosomal protein S8

Chain L2

30S ribosomal protein S12

Chain O2

30S ribosomal protein S15

Chain Q2

30S ribosomal protein S17