J3_6GZQ_016
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZQ_016 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1219
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6GZQ|1|A2|C|1045
6GZQ|1|A2|G|1046
6GZQ|1|A2|U|1047
6GZQ|1|A2|C|1048
6GZQ|1|A2|A|1049
6GZQ|1|A2|G|1050
*
6GZQ|1|A2|C|1089
6GZQ|1|A2|G|1090
6GZQ|1|A2|C|1091
6GZQ|1|A2|A|1092
6GZQ|1|A2|A|1093
6GZQ|1|A2|C|1094
6GZQ|1|A2|C|1095
*
6GZQ|1|A2|G|1168
6GZQ|1|A2|A|1169
6GZQ|1|A2|C|1170
6GZQ|1|A2|G|1171
6GZQ|1|A2|A|1172
6GZQ|1|A2|C|1173
6GZQ|1|A2|G|1174
Current chains
- Chain A2
- 16S ribosomal RNA
Nearby chains
- Chain B2
- 30S ribosomal protein S2
- Chain C2
- 30S ribosomal protein S3
- Chain E2
- 30S ribosomal protein S5
- Chain G2
- 30S ribosomal protein S7
- Chain I2
- 30S ribosomal protein S9
- Chain J2
- 30S ribosomal protein S10
- Chain N2
- 30S ribosomal protein S14 type Z
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