J3_6GZQ_017

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZQ_017 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1426

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6GZQ|1|A2|U|1055
6GZQ|1|A2|G|1056
*
6GZQ|1|A2|U|1065
6GZQ|1|A2|G|1066
6GZQ|1|A2|U|1067
6GZQ|1|A2|U|1068
6GZQ|1|A2|G|1069
*
6GZQ|1|A2|C|1080
6GZQ|1|A2|G|1081
6GZQ|1|A2|C|1082
6GZQ|1|A2|A|1083
6GZQ|1|A2|A|1084

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain B2

30S ribosomal protein S2

Chain E2

30S ribosomal protein S5