J3_6GZQ_018
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 6GZQ|1|A2|A|1164
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZQ_018 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.3256
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GZQ|1|A2|C|1098
6GZQ|1|A2|G|1099
6GZQ|1|A2|C|1100
*
6GZQ|1|A2|G|1137
6GZQ|1|A2|G|1138
6GZQ|1|A2|A|1139
6GZQ|1|A2|C|1140
6GZQ|1|A2|U|1141
6GZQ|1|A2|G|1142
6GZQ|1|A2|C|1143
*
6GZQ|1|A2|G|1156
6GZQ|1|A2|A|1157
6GZQ|1|A2|G|1158
6GZQ|1|A2|G|1159
6GZQ|1|A2|A|1160
6GZQ|1|A2|A|1161
6GZQ|1|A2|G|1162
6GZQ|1|A2|G|1163
6GZQ|1|A2|A|1164
6GZQ|1|A2|G|1165
Current chains
- Chain A2
- 16S ribosomal RNA
Nearby chains
- Chain B2
- 30S ribosomal protein S2
- Chain G2
- 30S ribosomal protein S7
- Chain I2
- 30S ribosomal protein S9
- Chain J2
- 30S ribosomal protein S10
- Chain N2
- 30S ribosomal protein S14 type Z
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