J3_6GZQ_021
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6GZQ|1|A1|C|34, 6GZQ|1|A1|U|476, 6GZQ|1|A1|C|484
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZQ_021 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.299
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6GZQ|1|A1|C|32
6GZQ|1|A1|U|33
6GZQ|1|A1|C|34
6GZQ|1|A1|G|35
*
6GZQ|1|A1|C|473
6GZQ|1|A1|G|474
6GZQ|1|A1|A|475
6GZQ|1|A1|U|476
6GZQ|1|A1|A|477
6GZQ|1|A1|G|478
6GZQ|1|A1|C|479
6GZQ|1|A1|G|480
6GZQ|1|A1|C|481
6GZQ|1|A1|A|482
6GZQ|1|A1|C|483
6GZQ|1|A1|C|484
6GZQ|1|A1|A|485
6GZQ|1|A1|G|486
6GZQ|1|A1|U|487
6GZQ|1|A1|A|488
6GZQ|1|A1|C|489
*
6GZQ|1|A1|G|496
6GZQ|1|A1|G|497
6GZQ|1|A1|A|498
6GZQ|1|A1|A|499
6GZQ|1|A1|A|500
6GZQ|1|A1|G|501
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain E1
- 50S ribosomal protein L4
- Chain P1
- 50S ribosomal protein L20
- Chain S1
- 50S ribosomal protein L23
- Chain c1
- 50S ribosomal protein L34
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