J3_6GZQ_037

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6GZQ|1|A2|C|48, 6GZQ|1|A2|A|50, 6GZQ|1|A2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZQ_037 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1493

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GZQ|1|A2|G|46
6GZQ|1|A2|C|47
6GZQ|1|A2|C|48
6GZQ|1|A2|U|49
6GZQ|1|A2|A|50
6GZQ|1|A2|A|51
6GZQ|1|A2|G|52
*
6GZQ|1|A2|U|354
6GZQ|1|A2|A|355
6GZQ|1|A2|G|356
6GZQ|1|A2|G|357
6GZQ|1|A2|A|358
6GZQ|1|A2|A|359
6GZQ|1|A2|U|360
6GZQ|1|A2|C|361
6GZQ|1|A2|U|362
*
6GZQ|1|A2|A|388
6GZQ|1|A2|G|389
6GZQ|1|A2|C|390

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain L2

30S ribosomal protein S12

Chain P2

30S ribosomal protein S16