J3_6GZX_016

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUAG*CGAAGC*GCGUUAAG

Length

18 nucleotides

Bulged bases

6GZX|1|A3|U|848, 6GZX|1|A3|A|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A3|C|809
6GZX|1|A3|U|810
6GZX|1|A3|A|811
6GZX|1|A3|G|812
*
6GZX|1|A3|C|834
6GZX|1|A3|G|835
6GZX|1|A3|A|836
6GZX|1|A3|A|837
6GZX|1|A3|G|838
6GZX|1|A3|C|839
*
6GZX|1|A3|G|844
6GZX|1|A3|C|845
6GZX|1|A3|G|846
6GZX|1|A3|U|847
6GZX|1|A3|U|848
6GZX|1|A3|A|849
6GZX|1|A3|A|850
6GZX|1|A3|G|851

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain B3

30S ribosomal protein S2

Chain E3

30S ribosomal protein S5

Chain H3

30S ribosomal protein S8