J3_6GZX_020

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGUGGAG*UAC*GGAAUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A4|G|918
6GZX|1|A4|G|919
6GZX|1|A4|U|920
6GZX|1|A4|G|921
6GZX|1|A4|G|922
6GZX|1|A4|A|923
6GZX|1|A4|G|924
*
6GZX|1|A4|U|1216
6GZX|1|A4|A|1217
6GZX|1|A4|C|1218
*
6GZX|1|A4|G|1318
6GZX|1|A4|G|1319
6GZX|1|A4|A|1320
6GZX|1|A4|A|1321
6GZX|1|A4|U|1322
6GZX|1|A4|C|1323

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain G4

30S ribosomal protein S7

Chain I4

30S ribosomal protein S9

Chain M4

30S ribosomal protein S13

Chain U4

30S ribosomal protein Thx

Chain V4

Ribosome hibernation promoting factor