J3_6GZX_028

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAGCCUGGUGUUGG*CCUAAC*GGACAGCGCUUGGCGGG

Length

37 nucleotides

Bulged bases

6GZX|1|A1|G|2252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A1|C|2105
6GZX|1|A1|A|2106
6GZX|1|A1|G|2107
6GZX|1|A1|C|2108
6GZX|1|A1|C|2109
6GZX|1|A1|U|2110
6GZX|1|A1|G|2111
6GZX|1|A1|G|2112
6GZX|1|A1|U|2113
6GZX|1|A1|G|2114
6GZX|1|A1|U|2115
6GZX|1|A1|U|2116
6GZX|1|A1|G|2117
6GZX|1|A1|G|2118
*
6GZX|1|A1|C|2219
6GZX|1|A1|C|2220
6GZX|1|A1|U|2221
6GZX|1|A1|A|2222
6GZX|1|A1|A|2223
6GZX|1|A1|C|2224
*
6GZX|1|A1|G|2237
6GZX|1|A1|G|2238
6GZX|1|A1|A|2239
6GZX|1|A1|C|2240
6GZX|1|A1|A|2241
6GZX|1|A1|G|2242
6GZX|1|A1|C|2243
6GZX|1|A1|G|2244
6GZX|1|A1|C|2245
6GZX|1|A1|U|2246
6GZX|1|A1|U|2247
6GZX|1|A1|G|2248
6GZX|1|A1|G|2249
6GZX|1|A1|C|2250
6GZX|1|A1|G|2251
6GZX|1|A1|G|2252
6GZX|1|A1|G|2253

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2

Chain H1

50S ribosomal protein L9

Chain W1

50S ribosomal protein L28