J3_6GZX_034

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGAC*GAUAAGCCAG*CUGGAUGUCC

Length

24 nucleotides

Bulged bases

6GZX|1|A2|A|70, 6GZX|1|A2|U|71, 6GZX|1|A2|A|72, 6GZX|1|A2|A|73, 6GZX|1|A2|G|111

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|G|53
6GZX|1|A2|G|54
6GZX|1|A2|A|55
6GZX|1|A2|C|56
*
6GZX|1|A2|G|69
6GZX|1|A2|A|70
6GZX|1|A2|U|71
6GZX|1|A2|A|72
6GZX|1|A2|A|73
6GZX|1|A2|G|74
6GZX|1|A2|C|75
6GZX|1|A2|C|76
6GZX|1|A2|A|77
6GZX|1|A2|G|78
*
6GZX|1|A2|C|105
6GZX|1|A2|U|106
6GZX|1|A2|G|107
6GZX|1|A2|G|108
6GZX|1|A2|A|109
6GZX|1|A2|U|110
6GZX|1|A2|G|111
6GZX|1|A2|U|112
6GZX|1|A2|C|113
6GZX|1|A2|C|114

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain S2

50S ribosomal protein L23

Chain T2

50S ribosomal protein L24

Chain X2

50S ribosomal protein L29

Chain c2

50S ribosomal protein L34