J3_6GZX_035

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GUGGGGCCC*GGGUACCCGAGUACCC*GGGAAUC

Length

32 nucleotides

Bulged bases

6GZX|1|A2|U|289, 6GZX|1|A2|G|398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|G|288
6GZX|1|A2|U|289
6GZX|1|A2|G|290
6GZX|1|A2|G|291
6GZX|1|A2|G|292
6GZX|1|A2|G|293
6GZX|1|A2|C|294
6GZX|1|A2|C|295
6GZX|1|A2|C|296
*
6GZX|1|A2|G|390
6GZX|1|A2|G|391
6GZX|1|A2|G|392
6GZX|1|A2|U|393
6GZX|1|A2|A|394
6GZX|1|A2|C|395
6GZX|1|A2|C|396
6GZX|1|A2|C|397
6GZX|1|A2|G|398
6GZX|1|A2|A|399
6GZX|1|A2|G|400
6GZX|1|A2|U|401
6GZX|1|A2|A|402
6GZX|1|A2|C|403
6GZX|1|A2|C|404
6GZX|1|A2|C|405
*
6GZX|1|A2|G|426
6GZX|1|A2|G|427
6GZX|1|A2|G|428
6GZX|1|A2|A|429
6GZX|1|A2|A|430
6GZX|1|A2|U|431
6GZX|1|A2|C|432

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain H2

50S ribosomal protein L9

Chain W2

50S ribosomal protein L28