J3_6GZX_037

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCGAGCUAGCC*GGCUAGGAGU*GCUAACCGAGCC

Length

33 nucleotides

Bulged bases

6GZX|1|A2|G|735, 6GZX|1|A2|G|825, 6GZX|1|A2|A|837, 6GZX|1|A2|A|838, 6GZX|1|A2|C|839, 6GZX|1|A2|G|841, 6GZX|1|A2|A|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|G|731
6GZX|1|A2|C|732
6GZX|1|A2|G|733
6GZX|1|A2|A|734
6GZX|1|A2|G|735
6GZX|1|A2|C|736
6GZX|1|A2|U|737
6GZX|1|A2|A|738
6GZX|1|A2|G|739
6GZX|1|A2|C|740
6GZX|1|A2|C|741
*
6GZX|1|A2|G|819
6GZX|1|A2|G|820
6GZX|1|A2|C|821
6GZX|1|A2|U|822
6GZX|1|A2|A|823
6GZX|1|A2|G|824
6GZX|1|A2|G|825
6GZX|1|A2|A|826
6GZX|1|A2|G|827
6GZX|1|A2|U|828
*
6GZX|1|A2|G|834
6GZX|1|A2|C|835
6GZX|1|A2|U|836
6GZX|1|A2|A|837
6GZX|1|A2|A|838
6GZX|1|A2|C|839
6GZX|1|A2|C|840
6GZX|1|A2|G|841
6GZX|1|A2|A|842
6GZX|1|A2|G|843
6GZX|1|A2|C|844
6GZX|1|A2|C|845

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain E2

50S ribosomal protein L4

Chain R2

50S ribosomal protein L22

Chain c2

50S ribosomal protein L34