J3_6GZX_038

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAGGGUGAAG*UGGAGGCCCGAACCG*CGGAUG

Length

31 nucleotides

Bulged bases

6GZX|1|A2|G|778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|C|747
6GZX|1|A2|A|748
6GZX|1|A2|G|749
6GZX|1|A2|G|750
6GZX|1|A2|G|751
6GZX|1|A2|U|752
6GZX|1|A2|G|753
6GZX|1|A2|A|754
6GZX|1|A2|A|755
6GZX|1|A2|G|756
*
6GZX|1|A2|U|773
6GZX|1|A2|G|774
6GZX|1|A2|G|775
6GZX|1|A2|A|776
6GZX|1|A2|G|777
6GZX|1|A2|G|778
6GZX|1|A2|C|779
6GZX|1|A2|C|780
6GZX|1|A2|C|781
6GZX|1|A2|G|782
6GZX|1|A2|A|783
6GZX|1|A2|A|784
6GZX|1|A2|C|785
6GZX|1|A2|C|786
6GZX|1|A2|G|787
*
6GZX|1|A2|C|807
6GZX|1|A2|G|808
6GZX|1|A2|G|809
6GZX|1|A2|A|810
6GZX|1|A2|U|811
6GZX|1|A2|G|812

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain c2

50S ribosomal protein L34