J3_6GZX_047

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UGUAGGCGGC*GCUAGACGGUGGGAGAGGG*CCUGGUCCACCCGUGACGCUGAGG

Length

53 nucleotides

Bulged bases

6GZX|1|A3|A|636, 6GZX|1|A3|A|648, 6GZX|1|A3|C|732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A3|U|563
6GZX|1|A3|G|564
6GZX|1|A3|U|565
6GZX|1|A3|A|566
6GZX|1|A3|G|567
6GZX|1|A3|G|568
6GZX|1|A3|C|569
6GZX|1|A3|G|570
6GZX|1|A3|G|571
6GZX|1|A3|C|572
*
6GZX|1|A3|G|633
6GZX|1|A3|C|634
6GZX|1|A3|U|635
6GZX|1|A3|A|636
6GZX|1|A3|G|637
6GZX|1|A3|A|638
6GZX|1|A3|C|639
6GZX|1|A3|G|640
6GZX|1|A3|G|641
6GZX|1|A3|U|642
6GZX|1|A3|G|643
6GZX|1|A3|G|644
6GZX|1|A3|G|645
6GZX|1|A3|A|646
6GZX|1|A3|G|647
6GZX|1|A3|A|648
6GZX|1|A3|G|649
6GZX|1|A3|G|650
6GZX|1|A3|G|651
*
6GZX|1|A3|C|721
6GZX|1|A3|C|722
6GZX|1|A3|U|723
6GZX|1|A3|G|724
6GZX|1|A3|G|725
6GZX|1|A3|U|726
6GZX|1|A3|C|727
6GZX|1|A3|C|728
6GZX|1|A3|A|729
6GZX|1|A3|C|730
6GZX|1|A3|C|731
6GZX|1|A3|C|732
6GZX|1|A3|G|733
6GZX|1|A3|U|734
6GZX|1|A3|G|735
6GZX|1|A3|A|736
6GZX|1|A3|C|737
6GZX|1|A3|G|738
6GZX|1|A3|C|739
6GZX|1|A3|U|740
6GZX|1|A3|G|741
6GZX|1|A3|A|742
6GZX|1|A3|G|743
6GZX|1|A3|G|744

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain F3

30S ribosomal protein S6

Chain H3

30S ribosomal protein S8

Chain L3

30S ribosomal protein S12

Chain O3

30S ribosomal protein S15

Chain Q3

30S ribosomal protein S17

Chain R3

30S ribosomal protein S18