J3_6GZX_050

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GUUUAAUUC*GAAGAACCUUACCAG*CUGGGCGACAC

Length

35 nucleotides

Bulged bases

6GZX|1|A3|U|938, 6GZX|1|A3|A|952, 6GZX|1|A3|G|953, 6GZX|1|A3|A|1206

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A3|G|931
6GZX|1|A3|U|932
6GZX|1|A3|U|933
6GZX|1|A3|U|934
6GZX|1|A3|A|935
6GZX|1|A3|A|936
6GZX|1|A3|U|937
6GZX|1|A3|U|938
6GZX|1|A3|C|939
*
6GZX|1|A3|G|950
6GZX|1|A3|A|951
6GZX|1|A3|A|952
6GZX|1|A3|G|953
6GZX|1|A3|A|954
6GZX|1|A3|A|955
6GZX|1|A3|C|956
6GZX|1|A3|C|957
6GZX|1|A3|U|958
6GZX|1|A3|U|959
6GZX|1|A3|A|960
6GZX|1|A3|C|961
6GZX|1|A3|C|962
6GZX|1|A3|A|963
6GZX|1|A3|G|964
*
6GZX|1|A3|C|1199
6GZX|1|A3|U|1200
6GZX|1|A3|G|1201
6GZX|1|A3|G|1202
6GZX|1|A3|G|1203
6GZX|1|A3|C|1204
6GZX|1|A3|G|1205
6GZX|1|A3|A|1206
6GZX|1|A3|C|1207
6GZX|1|A3|A|1208
6GZX|1|A3|C|1209

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain J3

30S ribosomal protein S10

Chain M3

30S ribosomal protein S13

Chain N3

30S ribosomal protein S14 type Z

Chain S3

30S ribosomal protein S19

Chain V3

Ribosome hibernation promoting factor