J3_6GZX_052

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UGCCUAAG*UAGGAAUCUUCCGCAAUGG*CUGACGGAGCG

Length

38 nucleotides

Bulged bases

6GZX|1|A4|C|48, 6GZX|1|A4|A|50, 6GZX|1|A4|A|51, 6GZX|1|A4|U|362, 6GZX|1|A4|U|363, 6GZX|1|A4|A|368, 6GZX|1|A4|U|382, 6GZX|1|A4|G|383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A4|U|45
6GZX|1|A4|G|46
6GZX|1|A4|C|47
6GZX|1|A4|C|48
6GZX|1|A4|U|49
6GZX|1|A4|A|50
6GZX|1|A4|A|51
6GZX|1|A4|G|52
*
6GZX|1|A4|U|354
6GZX|1|A4|A|355
6GZX|1|A4|G|356
6GZX|1|A4|G|357
6GZX|1|A4|A|358
6GZX|1|A4|A|359
6GZX|1|A4|U|360
6GZX|1|A4|C|361
6GZX|1|A4|U|362
6GZX|1|A4|U|363
6GZX|1|A4|C|364
6GZX|1|A4|C|365
6GZX|1|A4|G|366
6GZX|1|A4|C|367
6GZX|1|A4|A|368
6GZX|1|A4|A|369
6GZX|1|A4|U|370
6GZX|1|A4|G|371
6GZX|1|A4|G|372
*
6GZX|1|A4|C|381
6GZX|1|A4|U|382
6GZX|1|A4|G|383
6GZX|1|A4|A|384
6GZX|1|A4|C|385
6GZX|1|A4|G|386
6GZX|1|A4|G|387
6GZX|1|A4|A|388
6GZX|1|A4|G|389
6GZX|1|A4|C|390
6GZX|1|A4|G|391

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain L4

30S ribosomal protein S12

Chain P4

30S ribosomal protein S16