J3_6GZX_054

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCCGCACAAG*CUAGUAAUC*GGUGAAUACGUUCCCGGG

Length

37 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A4|C|907
6GZX|1|A4|C|908
6GZX|1|A4|C|909
6GZX|1|A4|G|910
6GZX|1|A4|C|911
6GZX|1|A4|A|912
6GZX|1|A4|C|913
6GZX|1|A4|A|914
6GZX|1|A4|A|915
6GZX|1|A4|G|916
*
6GZX|1|A4|C|1325
6GZX|1|A4|U|1326
6GZX|1|A4|A|1327
6GZX|1|A4|G|1328
6GZX|1|A4|U|1329
6GZX|1|A4|A|1330
6GZX|1|A4|A|1331
6GZX|1|A4|U|1332
6GZX|1|A4|C|1333
*
6GZX|1|A4|G|1352
6GZX|1|A4|G|1353
6GZX|1|A4|U|1354
6GZX|1|A4|G|1355
6GZX|1|A4|A|1356
6GZX|1|A4|A|1357
6GZX|1|A4|U|1358
6GZX|1|A4|A|1359
6GZX|1|A4|C|1360
6GZX|1|A4|G|1361
6GZX|1|A4|U|1362
6GZX|1|A4|U|1363
6GZX|1|A4|C|1364
6GZX|1|A4|C|1365
6GZX|1|A4|C|1366
6GZX|1|A4|G|1367
6GZX|1|A4|G|1368
6GZX|1|A4|G|1369

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain E4

30S ribosomal protein S5

Chain G4

30S ribosomal protein S7

Chain I4

30S ribosomal protein S9

Chain U4

30S ribosomal protein Thx

Chain V4

Ribosome hibernation promoting factor